3.1 Usage

In plants, many T2T assemblies have been completed. However, four years after the release of the first plant T2T genome [1], their adoption remains limited. In order to enhance the analysis and management of T2T genomes in plants, we developed PlanT2T Search module, which collects and organizes more than 180 plant T2T genomes, including newly annotated genomes by our team. In addition to employing the same analytical method mentioned in the Analysis module, we also analyzed the relationships within each gene orthogroup (OG), as well as a wealth of omics data.

Users can find the search panel in the home page. The search panel provides an efficient way to help users quickly find the information they are looking for.

3.1.1 Basic usage

  1. First select species - Users can select the species they are interested in from the drop-down list. The species list is based on the species that are available in the database. The default species is Arabidopsis thaliana.

  2. Then input query in search box - Users can enter the source gene ID or PlanT2T ID they are looking for in the search box. The search box supports both exact match and fuzzy match search. The search box will automatically prompt the user with the matching results as the user types in the search box.

  3. Finally click Search button

3.1.3 Fuzzy match

Input a part of gene ID or description (e.g. GO, KEGG, Function, etc.), then click the search button, the system will return multiple gene information that match the query, and the user can select the gene of interest from the search results to view the gene page.

e.g. GO:0003676 is a gene ontology term of Arabidopsis thaliana Col-CEN.

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