Browser Module

Introduction of Browser Module

In this module, scPlantDB provides meta information for each datasets. Information includesDataset, BioProject, Species, Tissue, Treatment, Genotype, Libraries, AGE, Samples, Cells and Publication.

Users can easily explore datasets using the Browser Button or the Download Button. Clicking the Browser Button opens the dataset in the CellxGene Browser, enabling users to explore individual dataset with ease. For those who prefer to work with local files, scPlantDB offers two file types for download: .h5ad and .rds.

By selecting at least two datasets from the table, users can click on the Compare selected datasets Button to initiate the comparison process. scPlantDB provides three different visualization options to facilitate dataset comparison: the Feature Plot which displays marker genes expression in the selected datasets; the Violin Plot shows the expression distribution of marker genes in the selected datasets. And the Heatmap displays the expression of marker genes in different cell types within the selected datasets. These visualizations provide valuable insights for researchers seeking to compare datasets and explore gene expression patterns.

How to filter datasets using the table filter

How to compare different datasets